GALAXY TOOL ERROR REPORT ------------------------
This error report was sent from the Galaxy instance hosted on the server "192.168.0.36:8080" ----------------------------------------------------------------------------- This is in reference to dataset id 377 from history id 2 ----------------------------------------------------------------------------- You should be able to view the history containing the related history item
176: Cuffcompare on data 175: transcript accuracy
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192.168.0.36:8080/history/view?id=f597429621d6eb2b ----------------------------------------------------------------------------- The user 'johnwu@ibms.sinica.edu.tw' provided the following information:
While executing cuffcompare, I encountered this error message:
Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'
I was practicing RNA-seq analysis steps on newly installed galaxy to test if i could easily analyze my data.
I could run cufflinks and cuffdiff through galaxy, but i'm unable to run cuffcompare.
how should i solve this problem?
thanks a lot! ----------------------------------------------------------------------------- job id: 126 tool id: cuffcompare ----------------------------------------------------------------------------- job command line: python /home/galaxy/software/galaxy_dist/tools/ngs_rna/cuffcompare_wrapper.py -s --ref_file="None" --dbkey=hg19 --index_dir=/home/galaxy/software/galaxy_dist/tool-data /home/galaxy/software/galaxy_dist/database/files/000/dataset_376.dat ----------------------------------------------------------------------------- job stderr: Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'
----------------------------------------------------------------------------- job stdout: cuffcompare v1.0.3 (2403) cuffcompare -o cc_output -s /home/galaxy/data/galaxy_data/sam_index/hg19.fa ./input1
----------------------------------------------------------------------------- job info: None ----------------------------------------------------------------------------- job traceback: None ----------------------------------------------------------------------------- (This is an automated message).