On Sun, Feb 12, 2012 at 4:34 PM, Peter Cock email@example.com:
On Sun, Feb 12, 2012 at 10:28 PM, Arthur Zheng firstname.lastname@example.org wrote:
I have downloaded and installed a local instance of galaxy on the linux server using my user account according to here: http://main.g2.bx.psu.edu/
Then I ran the following command:
and accessed galaxy through the local firefox browser on the server http://localhost:8080
Now I am trying to use some NGS files for FASTQ Groomer. Each file is in
server disk already, but very large (~8G each). I was not able to use the "upload file from your computer" function under the "Get Data" tab (maybe because each file is too large).
What am I supposed to do?
The method you tried "uploads" the file from your computer back to itself - making a copy as it goes with lots of overhead. You should probably consider the procedure here which allows you to avoid even making a copy on disk but point at the existing files already on the server:
I have followed the link you provided and selected the option "Upload directory of files". Now my NGS data are in the library, and I am wondering how I can feed them to FASTQ Groomer?