Solved it already. For future users' benefit: One should not add to the PYTHONPATH the MACS folder with libraries, but the longer address of the subfolder created by the installation: export PYTHONPATH=/xxx/xxx/xxx/xxx/MACS-1.3.7.1/lib/lib64/python2.6/site-packages:$PYTHONPATH
best and thanks for help,
Jerzy
On 10/17/2012 04:18 PM, Jennifer Jackson wrote:
Hello Jerzy,
The MACS wrapper in Galaxy currently supports version 1.3, which explains the problems with 1.4. Tool dependencies are noted on this wiki: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
For the other errors, are you trying to run MACS on the command line or within Galaxy? For command line, some environment variables need to be set up, the MACS documentation has the details: http://liulab.dfci.harvard.edu/MACS/INSTALL.html
Hopefully this helps,
Jen Galaxy team
On 10/17/12 2:09 AM, Jerzy Dyczkowski wrote:
Hello,
I cannot run MACS on the local Galaxy. When I install MACS version 1.4., it gives error something like "cannot find macs". When I install version 1.3.7.1 it gives error "/line 34, in <module> from MACS.OptValidator import opt_validate ImportError: No module named MACS.OptValidator"/ I sourced PATH to the directory with this module. Any ideas?
best regards,
Jerzy
-- Dr Jerzy Dyczkowski Bioinformatician Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE) Grisebachstr. 5 D-37077 Göttingen Email:Jerzy.Dyczkowski@eni-g.de Phone: +49 (0)551 39-12352
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