Hi Vijay,
For right now, using a Custom reference genome with these tools is the best solution: http://wiki.galaxyproject.org/Support#Custom_reference_genome
This genome in Galaxy is sourced from UCSC, as you probably know: http://wiki.galaxyproject.org/Support#Reference_genomes
The longer-term strategy for new/updated indexes will be worked out soon. Our immediate goal was to get the tools out on Main as soon as possible.
Thanks,
Jen Galaxy team
On 8/13/13 1:12 PM, Vijay Kumar wrote:
Dear sir, please add reference genome of Zebra finch genome in Bowtie2 and Tophat2 option in galaxy. thank u
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