Hi I have down-loaded UCSC HG19 annotation files from Cufflinks; Should I just load
genes.GTF file (about 100 MB) to galaxy for cufflink analysis?
From: vasu punj [mailto:firstname.lastname@example.org]
Sent: Tue 8/30/2011 5:52 PM
To: Jennifer Jackson; galaxy-user; Peng, Tao
Subject: Re: [galaxy-user] annotation file for cufflinks
If using Ensembl make sure it is properly formatted.
--- On Tue, 8/30/11, Peng, Tao <tpeng(a)fhcrc.org> wrote:
From: Peng, Tao <tpeng(a)fhcrc.org>
Subject: [galaxy-user] annotation file for cufflinks
To: "Jennifer Jackson" <jen(a)bx.psu.edu>, "galaxy-user"
Date: Tuesday, August 30, 2011, 1:52 PM
Hi jen and galaxy users, when I try to use cufflinks in GALAXY and select "use
reference annotation", I am NOT sure how to get the annotation file in GTF format for
I was trying to down-load the annotation file from Illumina donated package in Cufflink
website, I am NOT sure this is the right way to go for?
-----Inline Attachment Follows-----
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: