Hi Bjoern,
Thank you for the reply.
I found Table Recalibration, probably from GATK, on Tool Shed as you informed. http://toolshed.g2.bx.psu.edu/repository/view_repository?sort=name&advan... But I am only a user of usegalaxy public server, so I am afraid I think I can't install tool from tool shed.
What I am doing is here: https://usegalaxy.org/u/ksfk/h/illumina-exome
I think I need Table Recalibration in "NGS: GATK Tools (beta)" tool group of left pane of usegalaxy, but I cannot find it.
I am wondering whether there is any way to directly call Table Recalibration without web-application wrapper.
Regards, Kaz
2014-04-12 7:26 GMT+09:00 Björn Grüning bjoern.gruening@gmail.com:
Hi Kaz,
you are searching for GATK tools, right? Please have a look at the GATK suites in the Tool Shed.
Cheers, Bjoern
Am 12.04.2014 00:16, schrieb KS:
Dear all,
I can't find either of Table Recalibration or Base Recalibrator on usegalaxy public server. I am defident this is right place to ask, but seqanswers is clouded with many other pipelines.
Is there an update of base recalibration tool on usegalaxy?
Best, Kaz ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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