Hello Xaingmimg, When you uncompress the archive locally, does it contain a single file with more than 5000 reads? The consistent results and even number of reads (5000) may mean that the archive contains more than one file. Currently, Galaxy will only load the first file in an archive. Hopefully this helps or you have already found the solution, Take care, Jen Galaxy team On 11/7/11 10:35 PM, Xiangming Ding wrote:
Hi the file name is spr097786.fastq.bz2.After upload it showed spr097786.fastq. It showed it only contain around 5000 sequence reads. I also tried to upload through FTP. so i download the file to my computer and then upload to FTP in galaxy. the totlal 800M file was uploaded to the FTP successfully. But when i transfered the file to the history i met the same problem. only 5000 sequence reads was moved to history. I donnot whether it is because of the bz2 file extension. or i should try other compressed file extension.
xaingmimg
Quoting Jennifer Jackson <jen@bx.psu.edu>:
Hello Xiangmimg,
Data files can be loaded using a URL on the "Get Data => Upload" form. FTP and HTTP connections are supported. This is briefly described on that form.
If you are still having issues, there may be a problem with file compression or the connection. Downloading locally then using Galaxy's FTP upload function is certainly an option. http://wiki.g2.bx.psu.edu/Learn/Upload%20via%20FTP
Best,
Jen Galaxy team
On 11/6/11 8:54 PM, Xiangming Ding wrote:
Hi galaxy
I am a new user of galaxy. i met a problem and didnot find similar question in FAQ. I wanted to upload the data from DDBJ DRA dataset to galaxy through UTL method. The file is around 800M. However after uploading, the FASTQ file was just around 2M. So I wanted know whether it is possible to upload a large file to galaxy through URL method? or I should download the file to my pc and then uploading to galaxy through FTP method.
Thanks
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