Hello Giuseppe, Fold is included in the Cuffdiff output. Section "Differential expression tests", first file, column #9. http://cufflinks.cbcb.umd.edu/manual.html A tool like " Filter and Sort -> Filter" could be used to subset specific values. Hopefully this helps, Jen Galaxy team On 11/29/12 5:35 AM, Ianiri, Giuseppe wrote:
Hey guys, I have my Cuffdiff output and I was trying to figure out how to get the data I need. I am interested in the outputs Transcript and Gene differential expressed. Does anyone know how to filter for +/- 2-fold difference in expression levels? Thank you
Giuseppe Ianiri, Ph.D. Division of Cell Biology and Biophysics School of Biological Sciences 5100 Rockhill Road University of Missouri-Kansas City Kansas City, MO 64110 Email: ianirig@umkc.edu
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