I have python 2.7 and it seems to be the problem with it. Just formated the partition I had linux and fresh install everything and still have same problem. I did what is recommended here too. Check your Python version
Galaxy's core functionality is compatible with *Python* versions *2.5*, *2.6 *, and *2.7*. (Version 2.4 support was last included in the November 18, 2011 Distributionhttp://wiki.g2.bx.psu.edu/DevNewsBriefs/2011_11_18#Python_Support). Before reporting bugs, please ensure that python --version reports one of these three versions. If this is not the case, a simple solution is to manipulate your shell's $PATH variable to place the correct version first. This can be done for only Python by creating a new directory at the front of $PATH and creating a symbolic link to python in that directory:
Toggle line numbers http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#
1 http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_1 % mkdir ~/galaxy-python 2 http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_2 % ln -s /path/to/python2.5 ~/galaxy-python/python 3 http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_3 % export PATH=~/galaxy-python:$PATH
On Sat, Feb 25, 2012 at 5:50 PM, Luciano Cosme cosme.simple@gmail.comwrote:
*Hi Everyone, I have been running a Local Galaxy instance for a long time, but now I am having some problems with uploading data. I am getting the following error:*
Can't create peek [Errno 2] No such file or directory: '/home/koala2/galaxy-dist/database/files/000/dataset_13.dat'
and from the Terminal:* 127.0.0.1 - - [25/Feb/2012:17:45:00 -0500] "POST /library_common/library_item_updates HTTP/1.1" 200 - "http://127.0.0.1:8080/library_common/browse_library? sort=name&operation=browse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_checkboxes=false&webapp= galaxy&id=f2db41e1fa331b3e&page=1" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
- I reinstalled Unbutu and still having the same issue. I also removed Postgresql 9.1 and reinstalled it. I that it might be an issue with postgresql and not Galaxy, but I am not an expert. Any suggestions will be appreciated.
Thank you.
Luciano