Hi guys,
I created a new Galaxy instance (probably around early July) with the web launcher (https://biocloudcentral.herokuapp.com/launch).
I've been coming back and re-using it since then. However for the past week at least I haven't been able to launch new nodes. They show up as red on the indicators, and below I've pasted the error messages.
(Could this be related to a new version of cloudman being released?)
Thanks,
Greg
This is the cluster status log from my last attempt:
15:55:02 - Retrieved file 'persistent_data.yaml' from bucket 'cm-[redacted]' to 'pd.yaml'. 15:55:02 - Master starting 15:55:05 - Completed initial cluster configuration. 15:55:25 - Prerequisites OK; starting service 'SGE' 15:55:37 - Configuring SGE... 15:55:37 - Setting up SGE did not go smoothly, running command 'cd /opt/sge; ./inst_sge -m -x -auto /opt/sge/galaxyEC2.conf' returned code '1' and following stderr: '' 15:55:57 - Saved file 'persistent_data.yaml' to bucket 'cm-[redacted]' 15:55:57 - Trouble comparing local (/mnt/cm/post_start_script) and remote (post_start_script) file modified times: [Errno 2] No such file or directory: '/mnt/cm/post_start_script' 15:55:58 - Adding 2 instance(s)... 15:57:32 - Instance 'i-56ba942e' reported alive 15:57:33 - Successfully generated root user's public key. 15:57:33 - Sent master public key to worker instance 'i-56ba942e'. 15:57:47 - Adding instance 'i-56ba942e' as SGE administrative host. 15:57:47 - Process encountered problems adding instance 'i-56ba942e' as administrative host. Process returned code 2 15:57:47 - Adding instance 'i-56ba942e' to SGE execution host list. 15:57:47 - Process encountered problems adding instance 'i-56ba942e' as execution host. Process returned code 2 15:57:47 - Problems updating @allhosts aimed at adding 'i-56ba942e', running command 'export SGE_ROOT=/opt/sge;. $SGE_ROOT/default/common/settings.sh; /opt/sge/bin/lx24-amd64/qconf -Mhgrp /tmp/ah_add_15_57_47' returned code '2' and following stderr: '/bin/sh: 1: .: Can't open /opt/sge/default/common/settings.sh ' 15:57:47 - Waiting on worker instance 'i-56ba942e' to configure itself... 15:57:47 - Instance 'i-54ba942c' reported alive 15:57:47 - Sent master public key to worker instance 'i-54ba942c'. 15:58:01 - Adding instance 'i-54ba942c' as SGE administrative host. 15:58:01 - Process encountered problems adding instance 'i-54ba942c' as administrative host. Process returned code 2 15:58:01 - Adding instance 'i-54ba942c' to SGE execution host list. 15:58:01 - Process encountered problems adding instance 'i-54ba942c' as execution host. Process returned code 2 15:58:01 - Problems updating @allhosts aimed at adding 'i-54ba942c', running command 'export SGE_ROOT=/opt/sge;. $SGE_ROOT/default/common/settings.sh; /opt/sge/bin/lx24-amd64/qconf -Mhgrp /tmp/ah_add_15_58_01' returned code '2' and following stderr: '/bin/sh: 1: .: Can't open /opt/sge/default/common/settings.sh ' 15:58:01 - Waiting on worker instance 'i-54ba942c' to configure itself...