There's a picard sam to fastq converter which AFAIK works on bams too: https://main.g2.bx.psu.edu/tool_runner?tool_id=picard_SamToFastq On Sat, May 26, 2012 at 9:48 AM, William M. Strauss <cyclotouriste@mac.com> wrote:
I have a bunch of BAM files that I need to convert to FASTQ, are there such tools in Galaxy?
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;