Hi Raj,
To run the workflow on multiple samples, start it up on each paired set individually. These can be initiated to run in parallel.
A 'master workflow' controller that would manage workflows as modules in a larger pipeline (or something similar) has been discussed, but any development in this direction isn't currently planned for in the near-term.
Take care,
Jen Galaxy team
On 4/4/12 4:46 AM, Praveen Raj Somarajan wrote:
Hello All,
I'm seeking help on how do we run a workflow (say bwa mapping on PE data) on multiple samples (eg: 10 samples, PE data) together. I assume "multiple input files selection" option does not work here as the workflow accepts two fastq input files (PE data). Do you have any experience on this?
Best,
Raj
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