On Fri, Feb 18, 2011 at 12:35 PM, Felix Hammer hammerf@cip.ifi.lmu.de wrote:
Hi Peter, thx for the reply. You're right I want to display mapped RNA seq data in gBrowse. Currently I have the data in SAM format. Maybe I can figure out a trick using the text manipulation tools. thx, Felix
You forgot to CC the mailing list. If you want to use the data in GBrowse then why not use SAM/BAM directly? I've not tried it yet but I understand GBrowse can display BAM files... best asking on their mailing list if you need more details. This doesn't involve Galaxy directly though...
Peter