Two questions: 1. Is it possible to embed a workflow inside another workflow? 2. Is it possible to run a workflow via command line so that the execution could be automated? Say some other process produces the inputs, then command line or some other API (url maybe?) passes a reference to the inputs and kicks off the workflow. I found this, but no resolution: http://bitbucket.org/galaxy/galaxy-central/issue/43/workflow-command-line-ex... ************************************************ Alex Quezada Software Developer Genome Science/Joint Genome Institute (B-6) Bioscience Division MS M888 Los Alamos National Laboratory Los Alamos, NM 87545 phone: (505) 606-2153 fax: (505) 665-3024 email: alexq@lanl.gov ************************************************