Dear All,
After upgrading using
hg pull -u -r f09915c8da94
then,
hg diff
after which it asked me to upgrade db which I did using,
sh manage_db.sh upgrade
Galaxy fails to start on my local install.
galaxy.model.custom_types DEBUG 2010-09-13 11:41:18,475 pysqlite>=2 egg successfully loaded for sqlite dialect Traceback (most recent call last): File "/home/farhat/galaxy-central/lib/galaxy/web/buildapp.py", line 82, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/home/farhat/galaxy-central/lib/galaxy/app.py", line 42, in __init__ self.tool_data_tables = galaxy.tools.data.ToolDataTableManager( self.config.tool_data_table_config_path ) File "/home/farhat/galaxy-central/lib/galaxy/tools/data/__init__.py", line 22, in __init__ self.add_from_config_file( config_filename ) File "/home/farhat/galaxy-central/lib/galaxy/tools/data/__init__.py", line 31, in add_from_config_file tree = util.parse_xml( config_filename ) File "/home/farhat/galaxy-central/lib/galaxy/util/__init__.py", line 101, in parse_xml tree = ElementTree.parse(fname) File "/home/farhat/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 859, in parse tree.parse(source, parser) File "/home/farhat/galaxy-central/eggs/elementtree-1.2.6_20050316-py2.6.egg/elementtree/ElementTree.py", line 576, in parse source = open(source, "rb") IOError: [Errno 2] No such file or directory: './tool_data_table_conf.xml'
Any help with rectifying this?
Yours, -Farhat