Re: [galaxy-user] Iterating over a set of files
Hi Alex,
Workflows are designed to run on datasets that are first imported into
Galaxy (not external directories of files). Once the datasets are
imported, running each through the workflow is initiated individually.
We do plan to support running a tool or workflow on a set of datasets in
the future.
Thanks,
Jen
Galaxy Team
On 7/27/10 9:04 AM, Alex Quezada wrote:
Hello,
I have a use case where the input to the workflow would be a directory (local to Galaxy
instance) with a variable number of files in it. The workflow should iterate over all the
files, running the workflow for each one sequentially. How would I got about doing this
in galaxy? It's easy enough to write an input tool that takes a directory and outputs
the files, but not sure how to make it iterate. Any ideas?
************************************************
Alex Quezada
Software Developer
Genome Science/Joint Genome Institute (B-6)
Bioscience Division MS M888
Los Alamos National Laboratory
Los Alamos, NM 87545
phone: (505) 606-2153
fax: (505) 665-3024
email: alexq(a)lanl.gov
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Jennifer Jackson
http://usegalaxy.org