Will galaxy source be updated to be compatible with python 2.6?
The README.txt file stats that it requires python 2.4 or 2.5, but I used scramble.py script to build the required eggs for 2.6.
Trying to run galaxy (run.sh), I get a few warnings about deprecated modules: sets, sha. lib/galaxy/util/__init__.py:6: DeprecationWarning: the sets module is deprecated lib/galaxy/model/__init__.py:9: DeprecationWarning: the sha module is deprecated; use the hashlib module instead
Once I fix that, Galaxy starts up, but I get the following error when I try to go to it from a browser.
File 'build/bdist.linux-x86_64/egg/weberror/evalexception/middleware.py', line 364 in respond File 'build/bdist.linux-x86_64/egg/paste/debug/prints.py', line 98 in __call__ File 'build/bdist.linux-x86_64/egg/paste/wsgilib.py', line 539 in intercept_output File 'build/bdist.linux-x86_64/egg/beaker/session.py', line 103 in __call__ File 'build/bdist.linux-x86_64/egg/paste/recursive.py', line 80 in __call__ File 'build/bdist.linux-x86_64/egg/paste/httpexceptions.py', line 632 in __call__ File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/base.py', line 124 in __call__ body = method( trans, **kwargs ) File '/home/rochak/galaxy_python26/lib/galaxy/web/controllers/root.py', line 23 in index m_c=m_c, m_a=m_a ) File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/__init__.py', line 513 in fill_template return self.fill_template_mako( filename, **kwargs ) File '/home/rochak/galaxy_python26/lib/galaxy/web/framework/__init__.py', line 523 in fill_template_mako return template.render( **data ) File 'build/bdist.linux-x86_64/egg/mako/template.py', line 114 in render File 'build/bdist.linux-x86_64/egg/mako/runtime.py', line 287 in _render File 'build/bdist.linux-x86_64/egg/mako/runtime.py', line 304 in _render_context File 'build/bdist.linux-x86_64/egg/mako/runtime.py', line 337 in _exec_template File '/home/rochak/galaxy_python26/database/compiled_templates/ base_panels.mako.py', line 97 in render_body context.write(unicode(next.body())) AttributeError: 'builtin_function_or_method' object has no attribute 'body'
Thoughts?
Thanks, Rochak