Both should be quite easy. ememe will likely be easier since the EMBOSS tools are completely command line configurable. Weeder is slightly more difficult since it doesn't allow you to set the name of the output files. A simple wrapper script can deal with that though.
On Sep 15, 2009, at 10:12 AM, Stephen Taylor wrote:
Hi,
Would MEME be easier to integrate given that ememe is an EMBASSY program and you already have EMBOSS in Galaxy?
Thanks,
Steve
Stephen:
Not at the moment. However, if you know someone who has tried wrapping these for Galaxy, we can work with them to integrate these tools into our public instance.
Thanks,
anton galaxy team
On Sep 15, 2009, at 6:42 AM, Stephen Taylor wrote:
Hi,
Are there any plans to incorporate the motif finders MEME (http://meme.sdsc.edu/meme/intro.html ) and/or Weeder (http://159.149.109.9/modtools/) into Galaxy?
Thanks,
Steve _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
Anton Nekrutenko http://nekrut.bx.psu.edu http://galaxyproject.org
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