If you or your Galaxy admin are planning to install tool shed repositories, you should read the tool shed wiki at the following link.
http://wiki.g2.bx.psu.edu/Tool%20Shed
The following section describes installation of repositories into you local Galaxy instance.
http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_...
You my need to install 3rd party dependencies for some tools.
Greg Von Kuster
On Feb 23, 2012, at 6:45 AM, Peter Cock wrote:
On Thu, Feb 23, 2012 at 11:33 AM, Noa Sher noa.sher@gmail.com wrote:
Hi
I want to use VelvetOptimizer, and saw that it is availbale on the galaxy toolshed.
I have never used this and have no idea how to- do I download it or is this something that works with the glaaxy GUI? What do I need on my computer to run it? Or is this something for linux?
Thanks
Noa
The idea is that tools on the ToolShed can be added to a Galaxy Server by one of the server's administrators. This is not something a Galaxy User can take advantage of directly. Many groups or institutes run their own Galaxy, typically on a Linux server connected to a cluster. If you have access to a local Galaxy, talk to the people who run it.
Note you can run Galaxy on your own Linux/Mac computer, but it wouldn't be recommended unless you want to develop for Galaxy.
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