Hello,
This means that your BAM file contains only aligned data. Running another tool that counts up similar statistics, such as "NGS: SAM Tools -> flagstat" could be used to confirm the counts.
Best,
Jen Galaxy team
On 8/12/12 3:00 PM, i b wrote:
Hi, I have used for the first time this tool, picard bam statistic. I have aligned my reads to a custom genome (7904 bp long) and had the following output:
length= 7904 Aligned= 44 Unaligned= 0
Why is unaligned =0.
I had the unaligned =0 also when aligning agaist hg19...
thanks, ib ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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