[galaxy-user] Galaxy (and GMOD) at PAG 2011, Jan 15-19

Hello all,

Below is an announcement that went out to the larger GMOD community about GMOD related content at Plant and Animal Genome in a week.

Some particular highlights for the Galaxy Community are * Dan Blankenberg's hour long seminar on Galaxy on Wednesday, * Anne-Francoise Adam-Blondon's talk on the GnpIS portal * and the INRA posters on using Galaxy for SNP detection (#188) and using Galaxy in the GnpIS portal (#805).

See http://gmod.org/wiki/PAG_2011 for details and links.

Also, if you are presenting work that uses Galaxy at PAG (or any other conference), please feel free to post that to the list as well.

Thanks,

Dave C

---------- Forwarded message ---------- From: Dave Clements clements@nescent.org Date: Sat, Jan 8, 2011 at 9:32 PM Subject: [Gmod-announce] GMOD at PAG 2011, Jan 15-19 To: GMOD Announcements List gmod-announce@lists.sourceforge.net, GMOD Comparative Genomics and Phylogeny List gmod-cogephy@lists.sourceforge.net

Hello all,

GMOD will have a stronger presence then ever at the Plant and Animal Genome Conference (PAG 2011) http://gmod.org/wiki/PAG_2011, being held January 15-19 in San Diego. This includes, for the first time, *an all day GMOD Workshop http://www.intl-pag.org/19/19-gmod.html* on Wednesday, January 19th, featuring extended talks on

- MAKER http://gmod.org/wiki/MAKER: An easy to use genome annotation pipeline http://www.intl-pag.org/19/19-gmod.html#MAKER - Galaxy http://gmod.org/wiki/Galaxy: Analyze, Visualize, Communicatehttp://www.intl-pag.org/19/19-gmod.html#Galaxy - JBrowse http://gmod.org/wiki/JBrowse: A Next Generation Genome Browser http://www.intl-pag.org/19/19-gmod.html#JBrowse - Tripal http://gmod.org/wiki/Tripal: A Construction Toolkit for Online Genomic Databases http://www.intl-pag.org/19/19-gmod.html#Tripal - GMODviews http://gmod.org/wiki/GMODviews: A web-based knowledge-base and user-configurable interface for GMOD databases and tools, including Tripal, GBrowse, and Chado DBshttp://www.intl-pag.org/19/19-gmod.html#GMODviews - GBrowse_syn http://gmod.org/wiki/GBrowse_syn: The Generic Synteny Browser http://www.intl-pag.org/19/19-gmod.html#GBrowse_syn

PAG 2011 http://gmod.org/wiki/PAG_2011 will also feature workshops and tutorials covering

- BioMart http://gmod.org/wiki/BioMart: Ensembl and Ensembl Genomeshttp://www.intl-pag.org/19/abstracts/W29_PAGXIX_188.html - GBrowse http://gmod.org/wiki/GBrowse: The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowsehttp://www.intl-pag.org/19/19-gbrowse.html - CMap http://gmod.org/wiki/CMap: Using Gramene: A Genomics and Genetics Resource for Rice and other Grasseshttp://www.intl-pag.org/19/19-gramene.html

Plus *at least 25 more talkshttp://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Componentsand posters http://gmod.org/wiki/PAG_2011#Posters* about or using Pathway Tools http://www.intl-pag.org/19/abstracts/C02_PAGXIX_903.html, GBrowsehttp://www.intl-pag.org/19/abstracts/P08b_PAGXIX_828.html, Galaxy http://gmod.org/wiki/Galaxy, CMap http://gmod.org/wiki/Cmap, Apollo http://gmod.org/wiki/Apollo, Chado http://gmod.org/wiki/Chado, GBrowse_syn http://gmod.org/wiki/GBrowse_syn, JBrowsehttp://gmod.org/wiki/JBrowse, BioMart http://gmod.org/wiki/BioMart, MAKER http://gmod.org/wiki/MAKER, Tripal http://gmod.org/wiki/Tripal, and the GMOD Evo Hackathonhttp://www.intl-pag.org/19/abstracts/P08a_PAGXIX_814.html. See http://gmod.org/wiki/PAG_2011 for a more complete list.

Many GMOD usershttp://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Componentsand GMOD developers, including Stephen Ficklin http://gmod.org/wiki/User:Sficklin (Tripalhttp://gmod.org/wiki/Tripal), Carson Holt http://gmod.org/wiki/User:Carsonholt (MAKERhttp://gmod.org/wiki/MAKER), Barry Moore http://gmod.org/wiki/User:Bmoore (SOBAhttp://gmod.org/wiki/SOBA, MAKER http://gmod.org/wiki/MAKER), Dan Blankenberghttp://gmod.org/wiki/User:DanB( Galaxy http://gmod.org/wiki/Galaxy), Mitch Skinnerhttp://gmod.org/wiki/User:MitchSkinner( JBrowse http://gmod.org/wiki/JBrowse), Ken Youens-Clark (CMaphttp://gmod.org/wiki/CMap), Mike Caudy http://gmod.org/wiki/User:Mcaudy (GMODviewshttp://gmod.org/wiki/GMODviews), Rob Buels http://gmod.org/wiki/User:RobertBuels (Bio::Chado::Schemahttp://gmod.org/wiki/Bio::Chado::Schema, GBrowse_syn http://gmod.org/wiki/GBrowse_syn), and Scott Cainhttp://gmod.org/wiki/User:Scott( Chado http://gmod.org/wiki/Chado, GBrowse http://gmod.org/wiki/GBrowse, ...) will be attending PAG this year. Please seek each other out.

Dave Clements http://gmod.org/wiki/User:Clements Galaxy Project http://gmod.org/wiki/Galaxy

PS: In addition, three of the GMOD developers (Dan, Mitch, Scott) are also available to visit organizations in the San Diego areahttp://gmod.org/wiki/GMOD_News#GMOD_Roadshow_in_San_Diegoduring the meeting.