Apologies Michael, wrong answer to the wrong question! Please ignore and thanks for the heads up!
jen
On 3/18/11 10:22 AM, Jennifer Jackson wrote:
Hello Daniel,
Currently this is not possible through the Galaxy UI, but is is an excellent functionality suggestion that our team has been considering implementing.
As a work-around for now, all of the genomes in Galaxy come from external public sources: UCSC and others. The genome name/annotation tags should help you to find the source we used. If there is a particular genome that you are having trouble finding, please let us know and we can provide a direct pointer.
For future data questions, the mailing list galaxy-user@lists.bx.psu.edu would be a good choice. http://lists.bx.psu.edu/listinfo/galaxy-user
Thanks for using Galaxy!
Best,
Jen Galaxy team
On 3/10/11 5:53 AM, Michael E. Steiper wrote:
Hi All,
I have a general question about CpG masking. I have a .maf file, when I use the maf to fasta tool, it gives me an alignment of 2,735,329 bp. But if I CpG mask the .maf file (restricted definition) then I use the maf to fasta tool, I get a very different alignment length, 5,572,544 bp. It would be great to know what is the cause of these differences.
THANKS!
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