Hi, when I converted the solid output to fastq, the galaxy always complained the following error. Does anybody know why>> ------------- An error occurred running this job:Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 207, in <module> main() File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 188, in main
Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 207, in
main() File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 188, in main merge_reads_qual( fr, fq, con, trim_name=options.trim_name, out='db', double_encode=options.de, trim_first_base=options.trim_first_base, min_qual=options.min_qual, table_name="f3" ) File "/galaxy/home/g2main/galaxy_main/tools/next_gen_conversion/solid2fastq.py", line 83, in merge_reads_qual cursor.execute('insert into %s values("%s","%s","%s")' % (table_name, defline, lines[0], qual ) ) sqlite3.OperationalError: near "?3": syntax error
----------- Thanks!
Jia-Xing
-- Jia-Xing Yue
Graduate Student Ecology & Evolutionary Bio. -MS 170 Rice University 6100 Main Street Houston TX 77005
Phone: 1-832-360-6228 E-mail: yjx@rice.edu Blog: http://bestrok.blogspot.com/