Re: [galaxy-user] blastn: NameError: name 'cmd' is not defined

1 Jul 2011


      Thanks for answer, but I have just updated the galaxy source code and 
blastn works fine! Sorry for any inconvenience :)

30.06.2011 22:53, Kanwei Li пишет:
...
Hi Sergei,
This is a bug in the script, I will ask Peter, the author, to look 
into it. Thanks!
K
On Thu, Jun 30, 2011 at 12:44 PM, Sergei Ryazansky 
<s.ryazansky@gmail.com <mailto:s.ryazansky@gmail.com>> wrote:
Hello all,
First of all I would like to thank you guys for developing and
    mainting this so useful tool as Galaxy!
I have our own installation fo Galaxy (galaxy-dist version) with
    ncbi-blast-plus. Calling blastn results to the following error
    message:
An error occurred running this job:/Traceback (most recent call last):
    File
    "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py",
    line 29, in <module>
    sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err))
    NameError: name 'cmd' is not defined/
    /
    /
    Could you please explain, what this error can mean?
    The link to the shared history
    is//http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast//
    /
    /
    Thank you in advance!