Hi, I'm experiencing some strange problems with the fastq groomer. Trying to groom my files I get the following error:
"Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/fastq/fastq_groomer.py", line 37, in if __name__ == "__main__": main() File "/galaxy/home/g2main/galaxy_main/tools/fastq/fastq_groomer.py", line 18, in main for read_count, fastq_read in enumerate( fastqReader( open( input_filename ), format = input_type ) ): File "/galaxy/home/g2main/galaxy_main/lib/galaxy_utils/sequence/fastq.py", line 452, in __iter__ yield self.next() File "/galaxy/home/g2main/galaxy_main/lib/galaxy_utils/sequence/fastq.py", line 448, in next rval.assert_sequence_quality_lengths() File "/galaxy/home/g2main/galaxy_main/lib/galaxy_utils/sequence/fastq.py", line 142, in assert_sequence_quality_lengths assert qual_len == seq_len, "Invalid FASTQ file: quality score length (%i) does not match sequence length (%i)" % ( qual_len, seq_len ) AssertionError: Invalid FASTQ file: quality score length (63) does not match sequence length (36)"
I've double checked the file and it should be ok. Any ideas? thx, Felix