Hello Shalabh,
Galaxy is open source and available here: http://bitbucket.org/galaxy/galaxy-central/src/
Check under tools to find: tools/fastq/fastq_groomer.py/.xml
Other SOLiD specific tools are under: tools/solid_tools/
The rest is organized in this same general way. This wiki may be helpful: http://galaxyproject.org/Admin/Tools/Tool%20Config%20Syntax
Hopefully this helps. Next time, you can just send to one list, and for development questions, the best list would be galaxy-dev@bx.psu.edu. http://galaxyproject.org/Support
Best,
Jen Galaxy team
On 8/10/11 11:23 AM, Shalabh Sharma wrote:
Hi, I am trying to implement a SOLID pipeline for my solid data. I really like the pipeline used in Galaxy, I was looking for conversion of SOLID to fastq, but it didn't say that how it is achieved in Galaxy. I know for bwa you can use solid2fasta.pl but for bowtie i did not find any program or information. I would really appreciate if you can help me with this, like how it is achieved and where i can download the program used by Galaxy.
Thanks Shalabh Sharma
Shalabh Sharma Scientific Computing Professional Associate (Bioinformatics Specialist) Department of Marine Sciences University of Georgia Athens, GA 30602-3636
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