On Wed, Nov 6, 2013 at 12:08 PM, Fabrice Besnard fbesnard@biologie.ens.fr wrote:
Would you have any advice to select the output format, or alternatively, a tool in Galaxy that can convert pileup into .vcf?
Hi Fabrice,
I believe you only get the BCF output when "Genotype Likelihood Computation" is set to "Perform genotype likelihood computation".
Hope it helps, Carlos