Hi Kanwar,
We are unable to provide support for the tools at Galaxy. I see you have copied them on your email, so you will probably hear from them soon.
If you have further questions regarding the Genome Browser, please contact us again at genome@soe.ucsc.edu.
-- Brooke Rhead UCSC Genome Bioinformatics Group
On 7/20/12 3:31 PM, shamsher jagat wrote:
I am interested in getting regions flanking TSS, I am using Glaxaxy and have downloaded TSS sites using this post steps https://lists.soe.ucsc.edu/pipermail/genome/2011-June/026175.html
Now what I would like to do is to get 5000 bp upstream an downstream using flank tool in galaxy, but i realize it only gave me option for gene start or whole gene. Is it possible to extract 5000 bp upstream and downstream regions across tss start site . Once I have that then I want to find non overlaping genes in my regions from chipseq data.
Thanks
Kanwar _______________________________________________ Genome maillist - Genome@soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome