Thank you for the offer, it's a bit complicated for me. My users are
bioinformaticians who are doing a lot of microarray analysis and
meta-analysis and they need many of the public tools available that I
see on GenePattern
GenePattern seems to have many tools and visualizers around microarray
analysis, pathway and network inferencing, etc.
Galaxy seems to have many tools and visualizers around next-gen
sequencing, genomic analysis, and public server integration, etc.
I've written quite a few tools for Galaxy for other purposes and love
how easy it is to develop against and how flexible it is to your
needs. You can really do some elegant stuff and it is accomodating.
GenePattern I find to be much more rigid in what you can do and how
you have to develop against it.
If I could only have the Galaxy development platform with the
GenePattern and Galaxy tools! :(
On Wed, Jul 21, 2010 at 1:24 PM, Ross <ross.lazarus(a)gmail.com> wrote:
> I have wrappers for a couple of popular bioconductor packages.
> Not yet ready for production use, but happy to talk if you're interested?
> On Wed, Jul 21, 2010 at 7:09 PM, Leandro Hermida
> <softdev(a)leandrohermida.com> wrote:
>> Are there publicly available tools in Galaxy for microarray data
>> analysis, visualization, etc? Or is this kind of GenePattern's space
>> and you want to stay separate? :)
>> galaxy-user mailing list
galaxy-user mailing list
Research Scientist Department of Biostatistics
Associate Director Bioinformatics Core
Harvard School of Public Health
Skype: ohofmann Phone: +1 (617) 365 0984