Hi Dannon,
I found nginx.conf at /opt/galaxy/pkg/nginx_upload_module-2.0.12/nginx.conf
It contains ..
client_max_body_size 100m;
That looks like 100 Megabyte ?? but seems to result in 1 Megabyte. Can I set it to 10000m, or 1g ?
Can't see how to restart nginx yet.
Thanks, Greg E
On Mon, Jan 23, 2012 at 8:18 PM, Dannon Baker dannonbaker@me.com wrote:
Hi Greg,
This is a problem with the default client_max_body_size option in nginx being set far too small in the nginx.conf on the cloud AMI. It'll be fixed with our next AMI update, but to fix it you have to edit the nginx.conf on your cloud node to change the client_max_body_size to something more appropriate for Galaxy uploads and then restart the nginx process.
You'd have to do it for every instance, unfortunately, since that section of the filesystem is not persisted after shutdown. As a workaround the URL upload will work correctly with any size file if you're able to host the file you want to upload somewhere local, or you could use FTP upload and that should also function correctly.
-Dannon
On Jan 23, 2012, at 4:09 AM, Greg Edwards wrote:
Hi,
I'm building a Galaxy Cloud implementation, and running into a problem
uploading data files > 1 Mbyte, or 1,048,576 bytes.
I've started Galaxy Cloudman and a single server, all according to to
the Wiki. I can upload fasta format files < 1048756 bytes, and general CSV format peptide files, and indeed junk data files built with variants of " jot -r -c 1030000 a z | rs -g 0 100 >junk ".
If I upload files (via the built-in Get Data / Upload Files From Your
Computer) that are > than approx 2^20 bytes, the upload just hangs in the History and never completes.
These files upload fine to a local Galaxy server, and to Galaxy Main. On
the Galaxy local server, they run fine with my custom proteomics code. Ditto on the Cloud galaxy server when the (smaller than 1 Mbtye) files successfully upoad.
I can't see anthing useful in the logs, but I'm not sure which logs I
should be looking at. I'm just looking at tyhe logs presented on the Cloudman admin page.
<logs.png>
My environment is Mac, OS X 10.6.8. My data files are terminated with
/n, but the problem manifests the same with Windows style /r/n files.
I'll leave it at that in the hope this is a ridiculously simple probelm
and needs no more description ! If not, please let me know the logs I should look at and whatever else I should check.
Many thanks, Greg E
-- Greg Edwards, Port Jackson Bioinformatics gedwards2@gmail.com
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