20 Nov
2012
20 Nov
'12
3:04 p.m.
On Nov 20, 2012, at 11:21 AM, Kevin Y wrote:
Hello, Is there a way to get unmapped reads from tophat?
Only the very latest tophat version 1.4.1 IIRC (and maybe tophat2 from the beginning) save unmapped reads into a fastq.gz file output, and its not an option.
I don't think the galaxy output puts this into your history yet.
best, ido