7 Feb
2012
7 Feb
'12
10:52 p.m.
Hi all --
I'd like to know what programs are used when I run a tool on my data. Ideally I'd also like to know what parameters are passed to command line tools.
For example, I uploaded a sam file to the main galaxy server at PSU. I ran Filter Indels. I got output. What programs were used in this manipulation? samtools mpileup? GATK? FASTX toolkit?
I hope I'm missing something extremely obvious.
Thanks for your help.
Holly