Hi Steffi,
GeneTrack should be working again on the Main server, thanks for reporting the error.
For information on the inner workings of GeneTrack, you should consult the paper that you mentioned, along with http://genetrack.bx.psu.edu/ and you can additionally contact the GeneTrack author, who I've CC'd here.
Thanks for using Galaxy,
Dan
On Nov 10, 2011, at 11:32 AM, Stefanie Ververs wrote:
Hi everybody,
I'm using the Genetrack-Peak-Predictor to predict nucleosome positions. I still have some questions:
- Am I correct that the genetrack indexer seems to be down on the Public Galaxy Server? I get a server error, when I start it.
(The Genetrack Browser doesn't work either; although I'm still not quite sure whether there are dependencies.)
- By now, I know one paper on Genetrack - http://bioinformatics.oxfordjournals.org/content/24/10/1305.short and I found the following presentation slides: http://ged.msu.edu/angus/tutorials-2011/files/lecture-chipseq.pdf. Galaxy tells me to "cite Blankenberg D, et al. In preparation."
Is there additional information? It would be great to know how exactly the peak predictor works, but the slides give only a kind of overview, but of course no explaining and no details and the paper isn't that clear.
Thanks,
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