Hello Di,
The tool "Filter and Sort -> Select" can be used to select lines from a .bed file for chr1 only. On the tool form, in text box labeled "the pattern:", enter this term:
^chr1\s
Then sort with the tool "Sort" from the same tool group.
Hopefully this helps,
Best,
Jen Galaxy team
On 12/5/11 3:23 PM, Di Nguyen wrote:
Hi all,
I have a a bed file that I would like sort for chromosome 1 ONLY? Would you tell me the syntax to "select" lines that are chromosome 1 only instead of 1 or 10,11-19?
Thank you very much,
Di Nguyen U of Washington ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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