I have not checked this particular case now, but the difference between the different genomes are fairly small, especially for mouse and especially between these two versions. I have lifted thousands of regions between both and usually didn't get any unmappable regions.
cheers Max
On Wed, Dec 15, 2010 at 12:18 PM, pande pande@uni-muenster.de wrote:
Dear galaxy,
Conceptually if I take sequences from mm9 and use the lift over to convert them to mm8 and then annotate these with any software for cis element annotation do you think I will get a fairly good result ? I am bit confused. Does the annotation for the cis regulome undergo so much variation ?
thanks .
galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user