20 Jul
2011
20 Jul
'11
2:52 a.m.
Hello everyone,
I was trying to run tophat in a local version of galaxy, but I got the following error:
gzip: stdout: Broken pipe [Tue Jul 19 14:10:36 2011] Processing bowtie hits Error: could not open pipe gzip -cd < ./tophat_out/tmp/left_kept_reads_missing.fq.z
It seems that when tophat is calling gzip, the pipe can not be open.
Can anyone suggest a fix to this problem?
Thanks, Song Li
--
Postdoctoral Associate
Uwe Ohler Laboratory
Institute for Genome Sciences and Policy
101 Science Drive
CIEMAS 2171
Phone: 919-68-2124
Duke University