Hi folks,
First of all, I'm not sure if this is the right list to post to, so my apologies if it isn't.
I'm trying to install Galaxy on my machine, according to the instructions at http://g2.trac.bx.psu.edu/wiki/HowToInstall.
Everything works fine until I try to do:
$ sh run.sh
at which point I get a Python traceback in which the last call raises the following error: File "/home/galaxy/galaxy_dist/eggs/SQLAlchemy-0.3.3-py2.4.egg/sqlalchemy/engine/strategies.py", line 52, in create sqlalchemy.exceptions.InvalidRequestError: Cant get DBAPI module for dialect '<sqlalchemy.databases.sqlite.SQLiteDialect object at 0x2a983a6fd0>'
(whole traceback at end of mail)
I'm using Python version 2.4.3. on a Linux box (SuSE 9) The eggs/ directory does contain a bunch of pysqlite*.egg files, but apparently Python can't find them or else they're not the right ones, or whatnot.
Is there a step I missed during install?
Any other ideas?
Thanks in advance.
Thomas
------------ Whole traceback:
$ sh run.sh Architecture appears to be linux-x86_64 python path: /home/galaxy/galaxy_dist/lib:/home/galaxy/galaxy_dist/eggs Traceback (most recent call last): File "./scripts/paster.py", line 7, in ? command.run() File "/home/galaxy/galaxy_dist/eggs/PasteScript-1.0-py2.4.egg/paste/script/command.py", line 76, in run File "/home/galaxy/galaxy_dist/eggs/PasteScript-1.0-py2.4.egg/paste/script/command.py", line 115, in invoke File "/home/galaxy/galaxy_dist/eggs/PasteScript-1.0-py2.4.egg/paste/script/command.py", line 210, in run File "/home/galaxy/galaxy_dist/eggs/PasteScript-1.0-py2.4.egg/paste/script/serve.py", line 184, in command File "/home/galaxy/galaxy_dist/eggs/PasteScript-1.0-py2.4.egg/paste/script/serve.py", line 204, in loadapp File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 193, in loadapp File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 214, in loadobj File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 596, in create File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 96, in invoke File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/util/fixtypeerror.py", line 57, in fix_call File "/home/galaxy/galaxy_dist/eggs/Paste-1.0-py2.4.egg/paste/urlmap.py", line 24, in urlmap_factory File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 281, in get_app File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 596, in create File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/loadwsgi.py", line 99, in invoke File "/home/galaxy/galaxy_dist/eggs/PasteDeploy-1.0-py2.4.egg/paste/deploy/util/fixtypeerror.py", line 57, in fix_call File "/home/galaxy/galaxy_dist/lib/galaxy/app.py", line 48, in app_factory app = UniverseApplication( **kwargs ) File "/home/galaxy/galaxy_dist/lib/galaxy/app.py", line 23, in __init__ create_tables = True ) File "/home/galaxy/galaxy_dist/lib/galaxy/model/mapping.py", line 201, in init metadata.connect( url, **kwargs ) File "/home/galaxy/galaxy_dist/eggs/SQLAlchemy-0.3.3-py2.4.egg/sqlalchemy/schema.py", line 936, in connect File "/home/galaxy/galaxy_dist/eggs/SQLAlchemy-0.3.3-py2.4.egg/sqlalchemy/engine/__init__.py", line 91, in create_engine File "/home/galaxy/galaxy_dist/eggs/SQLAlchemy-0.3.3-py2.4.egg/sqlalchemy/engine/strategies.py", line 52, in create sqlalchemy.exceptions.InvalidRequestError: Cant get DBAPI module for dialect '<sqlalchemy.databases.sqlite.SQLiteDialect object at 0x2a983a6fd0>'