Hello Mackenzie,
Both of these are the same problem. The instructions for how to create and use a Custom reference genome are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome
My guess is that your reference genome either has format problems or is perhaps comprised of many unassembled/short fragments?
If you want to submit a bug report for the "Operate on Genomic Intervals" job that you ran using this custom reference genome that failed, we can take a closer look.
Best,
Jen Galaxy team
On 4/24/13 2:30 PM, Mackenzie Gavery wrote:
Hi,
I am having problems that I think are related:
*1. * I have not been able to visualize (in Trackster) a custom build that I recently added (Trackster says: "Could not load chroms for this dbkey:"). In addition, when I try to Operate on Genomic Intervals using bed files associated with that particular build I get an error: Error executing tool: maximum recursion depth exceeded while calling a Python object
- Now I am trying to add a new custom build to see if there was
something wrong with the previous build, and I get an error right after I click on "Add a new Custom Build" in the New Visualization menu (*The error has been logged to our team.* If you want to contact us about this error, please reference the following *GURU MEDITATION: #9e466e8a843e4ce9be878f3223bb0be4)*
I am just wondering if anyone is having similar issues? Or if this is a temporary problem?
Thanks,
Mackenzie
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