Hello there,
I was really pleased to see that you have the NGS toolbox within Galaxy. I was wondering if there are any plans to include TopHat (http://tophat.cbcb.umd.edu/)and/or Cufflinks (http://cufflinks.cbcb.umd.edu/) into the toolbox as this would be really beneficial.
Also do you have tools to convert fastq format to SAM?
Thanking you in advance.
Cheers, Rathi