Hi Sonali,
Roman sent you the info for the API (thanks!) and here is some information about the command line usage.
Basically, any of the tools can be run from the command line. Example:
python <tool> <input file> < output file>
All of the tool dependencies would need to be in place: https://bitbucket.org/galaxy/galaxy-central/wiki/ToolDependencies
Sort of related to this question, but also to a prior question: https://bitbucket.org/galaxy/galaxy-central/wiki/ToolConfigSyntax
I don't know if you have this already, but this is a google search link for the Galaxy wiki at bitbucket. Add in your own search terms to locate documents - these will cover in detail most of these sort of topics. http://www.google.com/search?q=site%3Ahttp%3A%2F%2Fbitbucket.org%2Fgalaxy%2F...
You can also search prior mailing list posts, using google or Nabble at GMOD (GMOD only has most recent posts). http://www.google.com/search?q=site%3Ahttp%3A%2F%2Flists.bx.psu.edu%2Fpiperm... http://gmod.org/wiki/Galaxy#Mailing_Lists
Best,
Jen Galaxy team
On 1/14/11 1:50 AM, Sonali Amonkar wrote:
Hi,
1.Does Galaxy provide command line execution of Workflows / tools?
2.Does Galaxy provide API of its own, which can be imported as a library in another program and used for executing certain workflows?
Thanks for your time.
Regards,
Sonali Amonkar
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