1. Download all drosophila genes from the UCSC Table Browser using
"Get data -> UCSC main" (see first attached image). Make sure output
format is set to "BED".
2. On the next page presented by the UCSC Table Browser select
"Introns" (see the second attached image).
3. Use "Filter and Sort -> Select" tool to grab lines with
in them. (see the third attached image).
This will be your list of first introns.
Let me know if you have trouble.
On Dec 20, 2009, at 1:48 PM, Hadzic, Tarik wrote:
I was wondering if you could help figure out how to download
sequences of all first introns in the fly genome? I've been dabbling
in the dark and the tutorials haven't helped me, at least not so far.
The materials in this message are private and may contain Protected
Healthcare Information or other information of a sensitive nature.
If you are not the intended recipient, be advised that any
unauthorized use, disclosure, copying or the taking of any action in
reliance on the contents of this information is strictly prohibited.
If you have received this email in error, please immediately notify
the sender via telephone or return mail.
galaxy-user mailing list