Hi,
How comes the barcode not be at 5' or 3' end, do you have primer sequences or stuff like that ? The barcode you show cannot be found in the sequence you show... I know that FastqMCF is an alternative tool that can be found in the toolshed and that deals with barcode.
Philippe
2012/12/3 Rajarshi Ghosh rajarshi@princeton.edu
TCGCAGGA