December 3, 2012 Distribution & News Brief http://wiki.galaxyproject.org/News/2012_12_03_DistributionNewsBrief
* Complete News Brief http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_03*
* Highlights:*
*
*NGS: Mapping* tools *Bowtie http://bowtie-bio.sourceforge.net/index.shtml* and *Lastz http://www.bx.psu.edu/%7Ersharris/lastz/* have moved from the *Galaxy distribution https://bitbucket.org/galaxy/galaxy-dist* to the *Galaxy Main Tool Shed http://toolshed.g2.bx.psu.edu/*.
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Improvements in the display of *Tool Shed http://wiki.galaxyproject.org/Tool%20Shed* repository dependencies and contents.
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More *Tool Shed http://toolshed.g2.bx.psu.edu/* updates including details of the Functional test framework http://wiki.galaxyproject.org/HostingALocalToolShed#Functional_test_framework_for_the_tool_shed, a new hgweb.config file and HgWebConfigManager tool, plus other management features.
*
Updated *UI* display and functionality for datasets and histories: new *paused* state and "resume/paused" toggle, new *History menu options*, and improved *Scatterplot* visualizations.
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The *SGE* job runner has now been fully deprecated and replaced with *DRMAA*.
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Several enhancements to aid with *reproducibility*: "Re-run" and "Extract workflow" validates datasets and tools, respectively, and a new data tables registry within the Administration menu, along with associated tools, corrects or warns about tool migration issues.
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Highlights from the new Galaxy *CloudMan http://usegalaxy.org/cloud* release and /*December 2012 Galaxy Update http://wiki.galaxyproject.org/GalaxyUpdates/2012_12*/.
*http://bitbucket.org/galaxy/galaxy-dist*
*http://galaxy-dist.readthedocs.org*
new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: $ hg pull -u -r f364d992270c
* Thanks for using Galaxy!*
The Galaxy Team http://wiki.galaxyproject.org/Galaxy%20Team