14 Apr
2011
14 Apr
'11
11:26 a.m.
Thanks for pointing this out, Brad. Both geecee and infoseq are in fact available on Galaxy under EMBOSS section. Guru. On Thu, Apr 14, 2011 at 12:13 PM, Brad Chapman <chapmanb@50mail.com> wrote:
Peter and Guru;
[Computing GC]
I'll be working with simple sequence files (FASTA, or even FASTQ, SFF, etc) rather than BED files, but I'll keep that in mind.
Emboss has some utilities that do this. infoseq and geecee, and there are also programs for exploring CpG islands:
http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/nucleic_cpg_islan...
Brad
-- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team 505 Wartik lab University Park PA 16802 guru@psu.edu