Hi Martina,
this is the actual URL of the file: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/SRA046/SRA046351/SRX099052/SRR349685.fastq.bz2
The URL that you were using is the link to the folder, not the file (you can tell e.g. by the suffix of the file - my link has it, yours does not).
Please try the new link and let me know if you encounter any problems. Goodluck.
thank you for using Galaxy!
Martin, Galaxy team
On Mon, Feb 17, 2014 at 2:23 PM, Martina Kracikova < martina_kracikova@yahoo.co.uk> wrote:
Hi Martin,
Yes, I used usegalaxy.org. I uploaded the data from "Get Data", "Upload File" and then pasted this link and selected FASTQ as file format: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/SRA046/SRA046351/SRX099052 It should be 337MB.
The job was running for over 20 hours and never finished, so I eventually deleted it. Now I can't run any other jobs, not even a small job from the Galaxy 101 tutorial (Sort on data 4 has been waiting to run for over 2 hours now), which on my colleague's computer took less than a minute to finish. This makes me think it's something specific to my account. Thanks for your help!
Martina
On Monday, February 17, 2014 1:36 PM, Martin Čech marten@bx.psu.edu wrote: Hello Martina,
how did you try to upload it and on what server? I assume it was usegalaxy.org but please confirm. DId you use the upload button on the main page or *Get Data / Upload File* from the tool menu? How big is the file?
thanks
Martin, Galaxy team
On Mon, Feb 17, 2014 at 11:37 AM, Martina Kracikova < martina_kracikova@yahoo.co.uk> wrote:
Hello,
I tried to upload some fasq data but the jobs never started running and I waited over 20 hours. I deleted them but now even very small jobs in the Galaxy 101 tutorial never start running. My colleague tried to execute the same job in the tutorial and it finished in less than a minute, so is this something to do with my account? I'm a registered user and am only using 8.4MB and am only trying to run 1 job. I would appreciate any help. Thank you!
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