Dear galaxy Users I am very very new to galaxy, will be highly obliged if some one could help me to find the way to analyse bacterial tramnscriptome. in the first step itself , i am having trouble to upload files... Does any one knows how to generate URL to upload data, my fastq files are about 3 gb each, Is there any specific pipeline to analyse bacterial transcriptome Thanking all of you Ateeq Ateequr Rehman House No. 2 ground floor Blauenstr. 10 79115 Freiburg im Breisgau ________________________________ From: Dannon Baker <dannonbaker@me.com> To: mailing list <margeemail@gmail.com> Cc: galaxy-user@lists.bx.psu.edu Sent: Wednesday, January 11, 2012 2:11 PM Subject: Re: [galaxy-user] CloudMan - Persist changes to file system is not a hyperlink / clickable For sharing a cluster (of any kind) just click the sharing icon () next to the cluster name and the dialog that pops up will walk you through the next steps. -Dannon On Jan 11, 2012, at 7:27 AM, mailing list wrote: So how do I get a share string for /mnt/galaxyData?
Thanks again,
Greg
On Tue, Jan 10, 2012 at 4:16 PM, Dannon Baker <dannonbaker@me.com> wrote:
Sorry, I should have specified before -- /mnt/galaxyData is automatically persisted, as it is assumed (and used behind the scenes in the case of a Galaxy Cluster) that this is where data will be kept. It's only /mnt/galaxyTools or /mnt/galaxyIndices that need individual flagging for persistence.
So, /mnt/galaxyData *is* safe to use for your own customizations and will be persisted automatically with no additional steps required on your part.
-Dannon
On Jan 10, 2012, at 4:02 PM, mailing list wrote:
I'm following the instructions here:
http://wiki.g2.bx.psu.edu/Admin/Cloud/Customize%20Galaxy%20Cloud
I ssh'd in and just made this change:
cd /mnt/galaxyData
sudo git clone git://github.com/JaneliaSciComp/msg.git
Now I want to persist it, but as my subject line says, I don't seem to
have the option in the admin.
Thanks,
Greg
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