Dear galaxy Users
I am very very new to galaxy, will be highly obliged if some one could help me to find the way to analyse bacterial tramnscriptome. in the first step itself , i am having trouble to upload files...
Does any one knows how to generate URL to upload data, my fastq files are about 3 gb each,
Is there any specific pipeline to analyse bacterial transcriptome
Thanking all of you
Ateeq Ateequr Rehman House No. 2 ground floor Blauenstr. 10 79115 Freiburg im Breisgau
________________________________ From: Dannon Baker dannonbaker@me.com To: mailing list margeemail@gmail.com Cc: galaxy-user@lists.bx.psu.edu Sent: Wednesday, January 11, 2012 2:11 PM Subject: Re: [galaxy-user] CloudMan - Persist changes to file system is not a hyperlink / clickable
For sharing a cluster (of any kind) just click the sharing icon () next to the cluster name and the dialog that pops up will walk you through the next steps.
-Dannon
On Jan 11, 2012, at 7:27 AM, mailing list wrote:
So how do I get a share string for /mnt/galaxyData?
Thanks again,
Greg
On Tue, Jan 10, 2012 at 4:16 PM, Dannon Baker dannonbaker@me.com wrote:
Sorry, I should have specified before -- /mnt/galaxyData is automatically persisted, as it is assumed (and used behind the scenes in the case of a Galaxy Cluster) that this is where data will be kept. It's only /mnt/galaxyTools or /mnt/galaxyIndices that need individual flagging for persistence.
So, /mnt/galaxyData *is* safe to use for your own customizations and will be persisted automatically with no additional steps required on your part.
-Dannon
On Jan 10, 2012, at 4:02 PM, mailing list wrote:
I'm following the instructions here:
http://wiki.g2.bx.psu.edu/Admin/Cloud/Customize%20Galaxy%20Cloud
I ssh'd in and just made this change:
cd /mnt/galaxyData
sudo git clone git://github.com/JaneliaSciComp/msg.git
Now I want to persist it, but as my subject line says, I don't seem to
have the option in the admin.
Thanks,
Greg
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
