Multiple sample runs using workflow
Hello All, I'm seeking help on how do we run a workflow (say bwa mapping on PE data) on multiple samples (eg: 10 samples, PE data) together. I assume "multiple input files selection" option does not work here as the workflow accepts two fastq input files (PE data). Do you have any experience on this? Best, Raj ________________________________ This e-mail contains PRIVILEGED AND CONFIDENTIAL INFORMATION intended solely for the use of the addressee(s). If you are not the intended recipient, please notify the sender by e-mail and delete the original message. Further, you are not to copy, disclose, or distribute this e-mail or its contents to any other person and any such actions that are unlawful. This e-mail may contain viruses. Ocimum Biosolutions has taken every reasonable precaution to minimize this risk, but is not liable for any damage you may sustain as a result of any virus in this e-mail. You should carry out your own virus checks before opening the e-mail or attachment. The information contained in this email and any attachments is confidential and may be subject to copyright or other intellectual property protection. If you are not the intended recipient, you are not authorized to use or disclose this information, and we request that you notify us by reply mail or telephone and delete the original message from your mail system. OCIMUMBIO SOLUTIONS (P) LTD
Hi Raj, To run the workflow on multiple samples, start it up on each paired set individually. These can be initiated to run in parallel. A 'master workflow' controller that would manage workflows as modules in a larger pipeline (or something similar) has been discussed, but any development in this direction isn't currently planned for in the near-term. Take care, Jen Galaxy team On 4/4/12 4:46 AM, Praveen Raj Somarajan wrote:
Hello All,
I'm seeking help on how do we run a workflow (say bwa mapping on PE data) on multiple samples (eg: 10 samples, PE data) together. I assume "multiple input files selection" option does not work here as the workflow accepts two fastq input files (PE data). Do you have any experience on this?
Best,
Raj
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participants (2)
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Jennifer Jackson -
Praveen Raj Somarajan