Data table named 'bowtie2_indexes' is required by tool but not configured
I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by tool but not configured Data table named 'tophat2_indexes' is required by tool but not configured. How can I solve it? Thanks
You'll need to update the tool_data_table_conf.xml file in your Galaxy home directory. If you haven't made changes to the file, you can copy tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made changes, add these entries to the file: -- <table name="bowtie2_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc" /> </table> <table name="tophat2_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc" /> </table> -- Finally, please direct questions about local Galaxy installations to the galaxy-dev mailing list: galaxy-dev@bx.psu.edu Best, J. On Oct 19, 2012, at 2:58 AM, Sachit Adhikari wrote:
I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by tool but not configured Data table named 'tophat2_indexes' is required by tool but not configured.
How can I solve it? Thanks ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Thanks but after adding those lines when I stop and started the server using --daemon mode, the server is not working? What might be the problem? On Fri, Oct 19, 2012 at 9:01 AM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
You'll need to update the tool_data_table_conf.xml file in your Galaxy home directory.
If you haven't made changes to the file, you can copy tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made changes, add these entries to the file:
-- <table name="bowtie2_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc" /> </table>
<table name="tophat2_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc" /> </table> --
Finally, please direct questions about local Galaxy installations to the galaxy-dev mailing list: galaxy-dev@bx.psu.edu
Best, J.
On Oct 19, 2012, at 2:58 AM, Sachit Adhikari wrote:
I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by tool but not configured Data table named 'tophat2_indexes' is required by tool but not configured.
How can I solve it? Thanks ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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