The confidence intervals provided by Cufflinks/Cuffdiff are a good place to start; any
confidence interval that includes 0 should be looked on skeptically.
On Jul 3, 2013, at 2:52 PM, Hoang, Thanh wrote:
I have been working on RNA-seq data analysis using TopHat and Cuffdiff. One of the
problem I have is to define the cutoff RPKM value to tell whether a gene is expressed from
the background noise?.
Could anybody give me a suggestion?
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